IL_3JA1_035

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_035 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.175

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

3JA1|1|LA|U|1004
3JA1|1|LA|C|1005
3JA1|1|LA|C|1006
3JA1|1|LA|C|1007
3JA1|1|LA|A|1008
3JA1|1|LA|A|1009
3JA1|1|LA|A|1010
3JA1|1|LA|G|1011
*
3JA1|1|LA|C|1150
3JA1|1|LA|A|1151

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LL

50S ribosomal protein L13

Chain LS

50S ribosomal protein L20