IL_3JA1_037

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

3JA1|1|LA|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_037 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1844

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

3JA1|1|LA|U|1018
3JA1|1|LA|U|1019
3JA1|1|LA|A|1020
3JA1|1|LA|A|1021
3JA1|1|LA|G|1022
3JA1|1|LA|U|1023
3JA1|1|LA|G|1024
*
3JA1|1|LA|C|1140
3JA1|1|LA|U|1141
3JA1|1|LA|A|1142
3JA1|1|LA|A|1143
3JA1|1|LA|A|1144

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L7

50S ribosomal protein L36

Chain LH

50S ribosomal protein L6

Chain LL

50S ribosomal protein L13