IL_3JA1_047

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_047 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.118

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

3JA1|1|LA|A|1262
3JA1|1|LA|U|1263
3JA1|1|LA|A|1264
3JA1|1|LA|A|1265
3JA1|1|LA|G|1266
3JA1|1|LA|U|1267
3JA1|1|LA|A|1268
3JA1|1|LA|A|1269
*
3JA1|1|LA|U|2011
3JA1|1|LA|G|2012
3JA1|1|LA|A|2013
3JA1|1|LA|A|2014
3JA1|1|LA|A|2015
3JA1|1|LA|U|2016
3JA1|1|LA|U|2017

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L3

50S ribosomal protein L32

Chain LF

50S ribosomal protein L4

Chain LU

50S ribosomal protein L22