IL_3JA1_065

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

3JA1|1|LA|G|1699

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_065 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.157

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

3JA1|1|LA|C|1686
3JA1|1|LA|G|1687
3JA1|1|LA|U|1688
3JA1|1|LA|A|1689
3JA1|1|LA|A|1690
3JA1|1|LA|C|1691
*
3JA1|1|LA|G|1696
3JA1|1|LA|G|1697
3JA1|1|LA|A|1698
3JA1|1|LA|G|1699
3JA1|1|LA|A|1700
3JA1|1|LA|A|1701
3JA1|1|LA|G|1702

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LD

50S ribosomal protein L2

Chain SA

Small subunit ribosomal RNA; SSU rRNA