IL_3JA1_070

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

3JA1|1|LA|A|1801, 3JA1|1|LA|C|1816, 3JA1|1|LA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_070 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1352

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

3JA1|1|LA|U|1798
3JA1|1|LA|G|1799
3JA1|1|LA|C|1800
3JA1|1|LA|A|1801
3JA1|1|LA|A|1802
3JA1|1|LA|A|1803
3JA1|1|LA|C|1804
*
3JA1|1|LA|G|1813
3JA1|1|LA|G|1814
3JA1|1|LA|A|1815
3JA1|1|LA|C|1816
3JA1|1|LA|G|1817
3JA1|1|LA|U|1818
3JA1|1|LA|A|1819
3JA1|1|LA|U|1820
3JA1|1|LA|A|1821

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LD

50S ribosomal protein L2

Chain SA

Small subunit ribosomal RNA; SSU rRNA