IL_3JA1_086

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGUAGGAUAG*CCC

Length

14 nucleotides

Bulged bases

3JA1|1|LA|U|2111, 3JA1|1|LA|G|2116, 3JA1|1|LA|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_086 not in the Motif Atlas

Geometric match to IL_5J7L_264

Geometric discrepancy: 0.3128

The information below is about IL_5J7L_264

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

3JA1|1|LA|G|2110
3JA1|1|LA|U|2111
3JA1|1|LA|G|2112
3JA1|1|LA|U|2113
3JA1|1|LA|A|2114
3JA1|1|LA|G|2115
3JA1|1|LA|G|2116
3JA1|1|LA|A|2117
3JA1|1|LA|U|2118
3JA1|1|LA|A|2119
3JA1|1|LA|G|2120
*
3JA1|1|LA|C|2177
3JA1|1|LA|C|2178
3JA1|1|LA|C|2179

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LC

50S ribosomal protein L1

Chain S2

Transfer RNA; tRNA

Chain SG

30S ribosomal protein S7