IL_3JA1_092

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_092 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.3786

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

3JA1|1|LA|C|2456
3JA1|1|LA|U|2457
3JA1|1|LA|G|2458
3JA1|1|LA|A|2459
*
3JA1|1|LA|U|2493
3JA1|1|LA|G|2494
3JA1|1|LA|G|2495

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LO

50S ribosomal protein L16

Chain LY

50S ribosomal protein L27