IL_3JA1_104

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUU*ACUGC

Length

8 nucleotides

Bulged bases

3JA1|1|LA|C|2712, 3JA1|1|LA|U|2713

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_104 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.3901

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

3JA1|1|LA|G|2694
3JA1|1|LA|U|2695
3JA1|1|LA|U|2696
*
3JA1|1|LA|A|2711
3JA1|1|LA|C|2712
3JA1|1|LA|U|2713
3JA1|1|LA|G|2714
3JA1|1|LA|C|2715

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LP

50S ribosomal protein L17

Chain LR

50S ribosomal protein L19