IL_3JA1_108

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

3JA1|1|LA|A|2872, 3JA1|1|LA|A|2873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_108 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.1928

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

3JA1|1|LA|G|2843
3JA1|1|LA|G|2844
3JA1|1|LA|U|2845
3JA1|1|LA|G|2846
*
3JA1|1|LA|C|2870
3JA1|1|LA|U|2871
3JA1|1|LA|A|2872
3JA1|1|LA|A|2873
3JA1|1|LA|C|2874

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LP

50S ribosomal protein L17

Chain LR

50S ribosomal protein L19