IL_3JA1_133

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_133 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1983

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

3JA1|1|SA|U|409
3JA1|1|SA|G|410
3JA1|1|SA|A|411
3JA1|1|SA|A|412
3JA1|1|SA|G|413
3JA1|1|SA|A|414
3JA1|1|SA|A|415
3JA1|1|SA|G|416
*
3JA1|1|SA|U|427
3JA1|1|SA|G|428
3JA1|1|SA|U|429
3JA1|1|SA|A|430
3JA1|1|SA|A|431
3JA1|1|SA|A|432
3JA1|1|SA|G|433

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain S1

mRNA

Chain SD

30S ribosomal protein S4