IL_3JA1_163

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

3JA1|1|SA|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_163 not in the Motif Atlas

Homologous match to IL_4LFB_046

Geometric discrepancy: 0.2503

The information below is about IL_4LFB_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

3JA1|1|SA|U|1060
3JA1|1|SA|G|1061
*
3JA1|1|SA|C|1195
3JA1|1|SA|A|1196
3JA1|1|SA|A|1197

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain S1

mRNA

Chain SC

30S ribosomal protein S3

Chain SE

30S ribosomal protein S5

Chain SJ

30S ribosomal protein S10

Chain SN

30S ribosomal protein S14