IL_3JA1_171

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_171 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2613

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3JA1|1|SA|C|1303
3JA1|1|SA|G|1304
3JA1|1|SA|G|1305
3JA1|1|SA|A|1306
3JA1|1|SA|U|1307
3JA1|1|SA|U|1308
*
3JA1|1|SA|A|1329
3JA1|1|SA|U|1330
3JA1|1|SA|G|1331
3JA1|1|SA|A|1332
3JA1|1|SA|A|1333
3JA1|1|SA|G|1334

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SM

30S ribosomal protein S13

Chain SS

30S ribosomal protein S19