IL_3JA1_190

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGGCUUUGAAGUG*CAUGGAGCCGACCUUGAAAUAC

Length

37 nucleotides

Bulged bases

3JA1|1|LA|C|2129, 3JA1|1|LA|U|2130, 3JA1|1|LA|U|2131, 3JA1|1|LA|U|2132, 3JA1|1|LA|G|2157, 3JA1|1|LA|C|2165, 3JA1|1|LA|U|2166

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JA1|1|LA|G|2124
3JA1|1|LA|G|2125
3JA1|1|LA|A|2126
3JA1|1|LA|G|2127
3JA1|1|LA|G|2128
3JA1|1|LA|C|2129
3JA1|1|LA|U|2130
3JA1|1|LA|U|2131
3JA1|1|LA|U|2132
3JA1|1|LA|G|2133
3JA1|1|LA|A|2134
3JA1|1|LA|A|2135
3JA1|1|LA|G|2136
3JA1|1|LA|U|2137
3JA1|1|LA|G|2138
*
3JA1|1|LA|C|2153
3JA1|1|LA|A|2154
3JA1|1|LA|U|2155
3JA1|1|LA|G|2156
3JA1|1|LA|G|2157
3JA1|1|LA|A|2158
3JA1|1|LA|G|2159
3JA1|1|LA|C|2160
3JA1|1|LA|C|2161
3JA1|1|LA|G|2162
3JA1|1|LA|A|2163
3JA1|1|LA|C|2164
3JA1|1|LA|C|2165
3JA1|1|LA|U|2166
3JA1|1|LA|U|2167
3JA1|1|LA|G|2168
3JA1|1|LA|A|2169
3JA1|1|LA|A|2170
3JA1|1|LA|A|2171
3JA1|1|LA|U|2172
3JA1|1|LA|A|2173
3JA1|1|LA|C|2174

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LC

50S ribosomal protein L1

Chain S2

Transfer RNA; tRNA