3D structure

PDB id
3JA1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
UGA*UUA
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JA1_211 not in the Motif Atlas
Geometric match to IL_7ECO_006
Geometric discrepancy: 0.2327
The information below is about IL_7ECO_006
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

3JA1|1|LA|U|2106
3JA1|1|LA|G|2107
3JA1|1|LA|A|2108
*
3JA1|1|LA|U|2181
3JA1|1|LA|U|2182
3JA1|1|LA|A|2183

Current chains

Chain LA
23S ribosomal RNA

Nearby chains

Chain LC
50S ribosomal protein L1
Chain S2
Transfer RNA; tRNA
Chain SK
30S ribosomal protein S11

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2013 s