IL_3JA1_217

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGG*CUGA

Length

7 nucleotides

Bulged bases

3JA1|1|SA|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_217 not in the Motif Atlas

Geometric match to IL_4WF9_044

Geometric discrepancy: 0.3565

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

3JA1|1|SA|U|375
3JA1|1|SA|G|376
3JA1|1|SA|G|377
*
3JA1|1|SA|C|386
3JA1|1|SA|U|387
3JA1|1|SA|G|388
3JA1|1|SA|A|389

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SP

30S ribosomal protein S16

Chain ST

30S ribosomal protein S20