IL_3JAG_027

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GGUCC*GGC

Length

8 nucleotides

Bulged bases

3JAG|1|5|C|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAG_027 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.3048

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

3JAG|1|5|G|482
3JAG|1|5|G|483
3JAG|1|5|U|484
3JAG|1|5|C|485
3JAG|1|5|C|486
*
3JAG|1|5|G|670
3JAG|1|5|G|671
3JAG|1|5|C|672

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain r

eL28