IL_3JAG_092

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

3JAG|1|5|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAG_092 not in the Motif Atlas

Geometric match to IL_7A0S_047

Geometric discrepancy: 0.2042

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

3JAG|1|5|U|2415
3JAG|1|5|G|2416
3JAG|1|5|A|2417
3JAG|1|5|A|2418
3JAG|1|5|C|2419
*
3JAG|1|5|G|2427
3JAG|1|5|A|2428
3JAG|1|5|A|2429

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain l

eL39