IL_3JAG_198

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

3JAG|1|9|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAG_198 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1032

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

3JAG|1|9|G|411
3JAG|1|9|G|412
3JAG|1|9|G|413
*
3JAG|1|9|C|424
3JAG|1|9|G|425
3JAG|1|9|A|426
3JAG|1|9|U|427
3JAG|1|9|U|428
3JAG|1|9|C|429

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain JJ

uS4

Chain XX

uS12