IL_3JAG_219

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GACCGC*GAGGC

Length

11 nucleotides

Bulged bases

3JAG|1|9|C|877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAG_219 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.371

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

3JAG|1|9|G|874
3JAG|1|9|A|875
3JAG|1|9|C|876
3JAG|1|9|C|877
3JAG|1|9|G|878
3JAG|1|9|C|879
*
3JAG|1|9|G|907
3JAG|1|9|A|908
3JAG|1|9|G|909
3JAG|1|9|G|910
3JAG|1|9|C|911

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain HH

eS7

Chain LL

uS17

Chain R

eL19