IL_3JAG_247

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

3JAG|1|9|C|1403, 3JAG|1|9|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAG_247 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.2147

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

3JAG|1|9|A|1402
3JAG|1|9|C|1403
3JAG|1|9|U|1404
3JAG|1|9|A|1405
*
3JAG|1|9|U|1441
3JAG|1|9|U|1442
3JAG|1|9|C|1443
3JAG|1|9|U|1444

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain QQ

uS9

Chain UU

uS10

Chain gg

RACK1