IL_3JAG_249

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CCCCC*GGCG

Length

9 nucleotides

Bulged bases

3JAG|1|9|C|1418

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAG_249 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.3955

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

3JAG|1|9|C|1415
3JAG|1|9|C|1416
3JAG|1|9|C|1417
3JAG|1|9|C|1418
3JAG|1|9|C|1419
*
3JAG|1|9|G|1428
3JAG|1|9|G|1429
3JAG|1|9|C|1430
3JAG|1|9|G|1431

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain QQ

uS9

Chain TT

eS19