RNA 3D Hub //

Motif IL_15698.1 Version IL_15698.1 of this group appears in releases 3.89 to 3.90

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 71-72-63-43-64-5
1 IL_5DO4_0045DO40.55592ARNA (25-MER)G3A4A5A8*UMS21A22CFZ23cWWcSWcWW
2 IL_8C3A_0708C3A0.54820Other IL (H)1 LSU rRNAG1614A1615U1616A1617*U1820G1821C1822cWWcSWcWW
3 IL_5TBW_0645TBW0.52200Other IL1 LSU rRNAG1618A1619U1620A1621*U1824G1825C1826cWWncWWcSWcWW
4 IL_4KQY_0034KQY0.17540Major groove platform with extra pairA SAM-I riboswitchC45A46A47C48*G77U78G79cWWntSHcSHcWW
5 IL_5FJC_0035FJC0.00000Major groove platform with extra pairA SAM-I riboswitchC44A45A46C47*G56U57G58cWWtSHcSHcWW
6 IL_4OQU_0014OQU0.06660Major groove platform with extra pairASAM-I/IV riboswitchC24A25A26C27*G46U47G48cWWtSHcSHcWW
7 IL_4AOB_0034AOB0.10070Major groove platform with extra pairA SAM-I riboswitchC44A45A46C47*G56U57G58cWWtSHncSHcWW
8 IL_3V7E_0033V7E0.11910Major groove platform with extra pairC SAM-I riboswitchC44A45A46C47*G88U89G90cWWtSHncSHcWW
9 IL_2A64_0082A640.67051Aribonuclease P RNAG237U238A239A241*U191G192C193ncWWncSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAAC*GUG5
GAUA*UGC2
GAA(CFZ)AA*(UMS)A(CFZ)1
GUAAA*UGC1
Non-Watson-Crick part of the motif
SequenceCounts
AA*U5
AU*G2
AA(CFZ)A*A1
UAA*G1

Release history

Release3.893.90
Date2024-10-092024-11-06
StatusNew id, > 2 parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove platform with extra pair (5)
  • (2)
  • Other IL (1)
  • Other IL (H) (1)
    • Basepair signature
    cWW-tSH-cSH-cWW
    Heat map statistics
    Min 0.07 | Avg 0.40 | Max 0.95
    Help

    Coloring options:

    IL_5DO4_004:IL_5DO4_004 = 0IL_5DO4_004:IL_8C3A_070 = 0.3108IL_5DO4_004:IL_5TBW_064 = 0.3106IL_5DO4_004:IL_4KQY_003 = 0.5197IL_5DO4_004:IL_5FJC_003 = 0.5559IL_5DO4_004:IL_4OQU_001 = 0.5694IL_5DO4_004:IL_4AOB_003 = 0.558IL_5DO4_004:IL_3V7E_003 = 0.5371IL_5DO4_004:IL_2A64_008 = 0.9507IL_8C3A_070:IL_5DO4_004 = 0.3108IL_8C3A_070:IL_8C3A_070 = 0IL_8C3A_070:IL_5TBW_064 = 0.106IL_8C3A_070:IL_4KQY_003 = 0.5052IL_8C3A_070:IL_5FJC_003 = 0.5482IL_8C3A_070:IL_4OQU_001 = 0.5612IL_8C3A_070:IL_4AOB_003 = 0.5701IL_8C3A_070:IL_3V7E_003 = 0.5324IL_8C3A_070:IL_2A64_008 = 0.8655IL_5TBW_064:IL_5DO4_004 = 0.3106IL_5TBW_064:IL_8C3A_070 = 0.106IL_5TBW_064:IL_5TBW_064 = 0IL_5TBW_064:IL_4KQY_003 = 0.4678IL_5TBW_064:IL_5FJC_003 = 0.522IL_5TBW_064:IL_4OQU_001 = 0.5363IL_5TBW_064:IL_4AOB_003 = 0.5442IL_5TBW_064:IL_3V7E_003 = 0.5037IL_5TBW_064:IL_2A64_008 = 0.8611IL_4KQY_003:IL_5DO4_004 = 0.5197IL_4KQY_003:IL_8C3A_070 = 0.5052IL_4KQY_003:IL_5TBW_064 = 0.4678IL_4KQY_003:IL_4KQY_003 = 0IL_4KQY_003:IL_5FJC_003 = 0.1754IL_4KQY_003:IL_4OQU_001 = 0.1719IL_4KQY_003:IL_4AOB_003 = 0.1967IL_4KQY_003:IL_3V7E_003 = 0.2161IL_4KQY_003:IL_2A64_008 = 0.741IL_5FJC_003:IL_5DO4_004 = 0.5559IL_5FJC_003:IL_8C3A_070 = 0.5482IL_5FJC_003:IL_5TBW_064 = 0.522IL_5FJC_003:IL_4KQY_003 = 0.1754IL_5FJC_003:IL_5FJC_003 = 0IL_5FJC_003:IL_4OQU_001 = 0.0666IL_5FJC_003:IL_4AOB_003 = 0.1007IL_5FJC_003:IL_3V7E_003 = 0.1191IL_5FJC_003:IL_2A64_008 = 0.6705IL_4OQU_001:IL_5DO4_004 = 0.5694IL_4OQU_001:IL_8C3A_070 = 0.5612IL_4OQU_001:IL_5TBW_064 = 0.5363IL_4OQU_001:IL_4KQY_003 = 0.1719IL_4OQU_001:IL_5FJC_003 = 0.0666IL_4OQU_001:IL_4OQU_001 = 0IL_4OQU_001:IL_4AOB_003 = 0.0955IL_4OQU_001:IL_3V7E_003 = 0.1303IL_4OQU_001:IL_2A64_008 = 0.6803IL_4AOB_003:IL_5DO4_004 = 0.558IL_4AOB_003:IL_8C3A_070 = 0.5701IL_4AOB_003:IL_5TBW_064 = 0.5442IL_4AOB_003:IL_4KQY_003 = 0.1967IL_4AOB_003:IL_5FJC_003 = 0.1007IL_4AOB_003:IL_4OQU_001 = 0.0955IL_4AOB_003:IL_4AOB_003 = 0IL_4AOB_003:IL_3V7E_003 = 0.138IL_4AOB_003:IL_2A64_008 = 0.6719IL_3V7E_003:IL_5DO4_004 = 0.5371IL_3V7E_003:IL_8C3A_070 = 0.5324IL_3V7E_003:IL_5TBW_064 = 0.5037IL_3V7E_003:IL_4KQY_003 = 0.2161IL_3V7E_003:IL_5FJC_003 = 0.1191IL_3V7E_003:IL_4OQU_001 = 0.1303IL_3V7E_003:IL_4AOB_003 = 0.138IL_3V7E_003:IL_3V7E_003 = 0IL_3V7E_003:IL_2A64_008 = 0.6569IL_2A64_008:IL_5DO4_004 = 0.9507IL_2A64_008:IL_8C3A_070 = 0.8655IL_2A64_008:IL_5TBW_064 = 0.8611IL_2A64_008:IL_4KQY_003 = 0.741IL_2A64_008:IL_5FJC_003 = 0.6705IL_2A64_008:IL_4OQU_001 = 0.6803IL_2A64_008:IL_4AOB_003 = 0.6719IL_2A64_008:IL_3V7E_003 = 0.6569IL_2A64_008:IL_2A64_008 = 0IL_5DO4_004IL_8C3A_070IL_5TBW_064IL_4KQY_003IL_5FJC_003IL_4OQU_001IL_4AOB_003IL_3V7E_003IL_2A64_008Discrepancy0.000.200.400.600.80
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