3D structure

PDB id
3JAH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.45 Å

Loop

Sequence
UAUAGACAG*CCGAA
Length
14 nucleotides
Bulged bases
3JAH|1|5|A|1960
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAH_083 not in the Motif Atlas
Homologous match to IL_8P9A_282
Geometric discrepancy: 0.3978
The information below is about IL_8P9A_282
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.3
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

3JAH|1|5|U|1957
3JAH|1|5|A|1958
3JAH|1|5|U|1959
3JAH|1|5|A|1960
3JAH|1|5|G|1961
3JAH|1|5|A|1962
3JAH|1|5|C|1963
3JAH|1|5|A|1964
3JAH|1|5|G|1965
*
3JAH|1|5|C|2022
3JAH|1|5|C|2023
3JAH|1|5|G|2024
3JAH|1|5|A|2025
3JAH|1|5|A|2026

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain m
eL40
Chain s
uL10

Coloring options:


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