IL_8P9A_282

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8P9A|1|AR|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99692.1

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

5

Unit IDs

8P9A|1|AR|U|1218
8P9A|1|AR|C|1219
8P9A|1|AR|U|1220
8P9A|1|AR|A|1221
8P9A|1|AR|G|1222
8P9A|1|AR|A|1223
8P9A|1|AR|C|1224
8P9A|1|AR|A|1225
8P9A|1|AR|G|1226
*
8P9A|1|AR|C|1283
8P9A|1|AR|C|1284
8P9A|1|AR|G|1285
8P9A|1|AR|A|1286
8P9A|1|AR|A|1287

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CK

60S ribosomal protein L9-A

Chain CU

60S ribosomal protein L20-A

Chain p0

60S acidic ribosomal protein P0