IL_3JAH_121

3D structure

PDB id

3JAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

3JAH|1|5|A|3785, 3JAH|1|5|C|3791, 3JAH|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAH_121 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1186

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

3JAH|1|5|C|3781
3JAH|1|5|C|3782
3JAH|1|5|A|3783
3JAH|1|5|A|3784
3JAH|1|5|A|3785
3JAH|1|5|U|3786
3JAH|1|5|G|3787
3JAH|1|5|C|3788
3JAH|1|5|C|3789
3JAH|1|5|U|3790
3JAH|1|5|C|3791
3JAH|1|5|G|3792
*
3JAH|1|5|C|3808
3JAH|1|5|G|3809
3JAH|1|5|C|3810
3JAH|1|5|G|3811

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain ii

eRF1

Chain n

eL41