#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 8 9 10break 11 12 131-132-63-96-76-86-1210-11
1 IL_8VTW_0768VTW0.110931A LSU rRNAC1934G1935A1936A19375MU1939U1940C19415MC1942U1943G1945*C19615MC1962G1964cWWncSHcHWcSHcWW
2 IL_5J7L_3195J7L0.10053DA LSU rRNAC1934G1935A1936A19375MU1939U1940C1941C1942U1943G1945*C19615MC1962G1964cWWncSHcHWncSHntSWcWW
3 IL_4WF9_0774WF90.00003X LSU rRNAC1961G1962A1963A1964U1966U1967C1968C1969U1970G1972*C1988C1989G1991cWWncSHncHWntSWcWW
4 IL_5TBW_0905TBW0.231831 LSU rRNAC2277C2278A2279A2280U2282G2283C2284C2285U2286G2288*C2304G2305G2307cWWcHWntSWtHhcWW
5 IL_8C3A_0958C3A0.250431 LSU rRNAC2255C2256A2257A2258U2260G2261C2262C2263U2264G2266*C2282G2283G2285cWWcHWtSWntHhcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CCAAAUGCCUCG*CGCG2
CGAAA(5MU)UC(5MC)UUG*C(5MC)UG1
CGAAAUCCUUG*CUG1
CGAAAUUCCUUG*CCCG1
Non-Watson-Crick part of the motif
SequenceCounts
CAAAUGCCUC*GC2
GAAA(5MU)UC(5MC)UU*(5MC)U1
GAAA(5MU)UCCUU*(5MC)U1
GAAAUUCCUU*CC1

Release history

Release3.88
Date2024-09-11
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (5)
  • Basepair signature
    cWW-cWW-tSH-L-cWW-L
    Heat map statistics
    Min 0.06 | Avg 0.20 | Max 0.76
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