Motif IL_66080.1 Version IL_66080.1 of this group appears in releases 3.88 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 1-13 | 2-6 | 3-9 | 6-7 | 6-8 | 6-12 | 10-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8C3A_095 | 8C3A | 0.2302 | 3 | 1 | LSU rRNA | C | 2255 | C | 2256 | A | 2257 | A | 2258 | U | 2260 | G | 2261 | C | 2262 | C | 2263 | U | 2264 | G | 2266 | * | C | 2282 | G | 2283 | G | 2285 | cWW | cHW | tSW | ntHh | cWW | ||
| 2 | IL_5TBW_090 | 5TBW | 0.2096 | 3 | 1 | LSU rRNA | C | 2277 | C | 2278 | A | 2279 | A | 2280 | U | 2282 | G | 2283 | C | 2284 | C | 2285 | U | 2286 | G | 2288 | * | C | 2304 | G | 2305 | G | 2307 | cWW | cHW | ntSW | tHh | cWW | ||
| 3 | IL_8VTW_076 | 8VTW | 0.0608 | 3 | 1A | LSU rRNA | C | 1934 | G | 1935 | A | 1936 | A | 1937 | 5MU | 1939 | U | 1940 | C | 1941 | 5MC | 1942 | U | 1943 | G | 1945 | * | C | 1961 | 5MC | 1962 | G | 1964 | cWW | ncSH | cHW | cSH | cWW | ||
| 4 | IL_5J7L_319 | 5J7L | 0.0000 | 3 | DA | LSU rRNA | C | 1934 | G | 1935 | A | 1936 | A | 1937 | 5MU | 1939 | U | 1940 | C | 1941 | C | 1942 | U | 1943 | G | 1945 | * | C | 1961 | 5MC | 1962 | G | 1964 | cWW | ncSH | cHW | ncSH | ntSW | cWW | |
| 5 | IL_4WF9_077 | 4WF9 | 0.1005 | 3 | X | LSU rRNA | C | 1961 | G | 1962 | A | 1963 | A | 1964 | U | 1966 | U | 1967 | C | 1968 | C | 1969 | U | 1970 | G | 1972 | * | C | 1988 | C | 1989 | G | 1991 | cWW | ncSH | ncHW | ntSW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAAAUGCCUCG*CGCG | 2 |
| CGAAA(5MU)UC(5MC)UUG*C(5MC)UG | 1 |
| CGAAA(5MU)UCCUUG*C(5MC)UG | 1 |
| CGAAAUUCCUUG*CCCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAAUGCCUC*GC | 2 |
| GAAA(5MU)UC(5MC)UU*(5MC)U | 1 |
| GAAA(5MU)UCCUU*(5MC)U | 1 |
| GAAAUUCCUU*CC | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Heat map statistics
- Min 0.06 | Avg 0.18 | Max 0.76
Coloring options: