3D structure

PDB id
3JAH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.45 Å

Loop

Sequence
GCUAG*CUUGGACC
Length
13 nucleotides
Bulged bases
3JAH|1|9|G|970
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAH_225 not in the Motif Atlas
Homologous match to IL_4V88_434
Geometric discrepancy: 0.1245
The information below is about IL_4V88_434
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_45067.5
Basepair signature
cWW-tSH-tSS-tHS-R-cWW-cWW-R
Number of instances in this motif group
16

Unit IDs

3JAH|1|9|G|952
3JAH|1|9|C|953
3JAH|1|9|U|954
3JAH|1|9|A|955
3JAH|1|9|G|956
*
3JAH|1|9|C|967
3JAH|1|9|U|968
3JAH|1|9|U|969
3JAH|1|9|G|970
3JAH|1|9|G|971
3JAH|1|9|A|972
3JAH|1|9|C|973
3JAH|1|9|C|974

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain BB
eS1
Chain OO
uS11

Coloring options:


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