RNA 3D Hub //

Motif IL_45067.5 Version IL_45067.5 of this group appears in releases 3.89 to 3.90

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11 121-51-122-32-114-115-95-105-126-96-107-8
1 IL_6UFH_0016UFH0.21571Kink-turnARNA (167-MER)C3A4U5G7A8U9C10*G23G24G25A26G27ncsScWWntsStSHtHScWW
2 IL_4WF9_0044WF90.19971Kink-turnX LSU rRNAC97U98U99G101A102U103C104*G81G82G83A84G85cWWntsSntSHntSstHScWW
3 IL_8VTW_0048VTW0.11981Kink-turn1A LSU rRNAC97G98U99G102A103U104C105*G81G82G83A84G85cWWtsStSHntSstHScWW
4 IL_6UFG_0016UFG0.09991Kink-turnARNA (166-MER)C3A4U5G7A8U9C10*G23G24G25A26G27cWWntsStSHtHScWW
5 IL_6UFM_0016UFM0.00001Kink-turnBRNA (98-MER)C3G4A5G7A8U9C10*G23G24G25A26G27cWWtsStSHtHScWW
6 IL_1T0K_0011T0K0.15271Kink-turnD+CRNA (16-mer)C54A55G56G58A59U60G61*C9G10G11A12G13cWWtsSntSHntHScWW
7 IL_4GXY_0054GXY0.16211Kink-turnAAdenosylcobalamin riboswitchC139G140A141G143A144U145C146*G82G83G84A85G86ncsScWWntsStSHtHScWW
8 IL_4V88_4344V880.18311Kink-turnA6 SSU rRNAC910U911U912G914A915U916U917*G895U896C897A898G899ncsScWWntsStSHtSsncWW
9 IL_5J7L_0355J7L0.23261Kink-turnAA SSU rRNAC699G700U701G703A704G705A706*U684G685U686A687G688cWWntsSntSHtHWtHScWW
10 IL_4V9F_0044V9F0.26171Kink-turn0 LSU rRNAC93G94A95G97A98A99C100*G77G78G79A80G81cWWntsStSHntHStHScWW
11 IL_6CZR_1236CZR0.60532Kink-turn with non-sequential stacking1a SSU rRNAC273G274A275G277A278C279G280*C238A239C241A242G243cWWntsStSHtHWcwWcWW
12 IL_4LFB_0114LFB0.58782Kink-turn with non-sequential stackingA SSU rRNAC277G278A279G281A282C283G284*C242A243C245A246G247ncsScWWntsStSHtHWcwWcWW
13 IL_5J7L_0145J7L0.59302Kink-turn with non-sequential stackingAA SSU rRNAC277G278A279G281A282U283C284*G242A243U245A246G247ncsScWWncSHtSHtHWcWwcWW
14 IL_8C3A_4108C3A0.57402Kink-turn with non-sequential stackingCM SSU rRNAU346U347U348A350A351C352G353*U309A310C312A313A314ncsScWWtsSntSHtHWcwWcWW
15 IL_4V88_4024V880.56772Kink-turn with non-sequential stackingA6 SSU rRNAU348U349U350A352A353C354G355*U311A312C314A315A316ncsScWWtsSntSHtHWcwWcWW
16 IL_3RW6_0023RW60.59854Kink-turn with non-sequential stackingHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAC43A44A45G47A48C49G50*U11A12C16A17G18ncsScWWtsStSHtHWcwWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAUCGAUC*GGGAG2
CGACGACG*CAUCAG2
UUUCAACG*UAUCAA2
CUUUGAUC*GGGAG1
CGUGGAUC*GGGAG1
CGACGAUC*GGGAG1
CAGAGAUG*CGGAG1
CGAGGAUC*GGGAG1
CUUGGAUU*GUCAG1
CGUAGAGA*UGUAG1
CGAAGAAC*GGGAG1
CGACGAUC*GAUUAG1
CAAUGACG*UAAGACAG1
Non-Watson-Crick part of the motif
SequenceCounts
AUCGAU*GGA2
GACGAC*AUCA2
UUCAAC*AUCA2
UUUGAU*GGA1
GUGGAU*GGA1
GACGAU*GGA1
AGAGAU*GGA1
GAGGAU*GGA1
UUGGAU*UCA1
GUAGAG*GUA1
GAAGAA*GGA1
GACGAU*AUUA1
AAUGAC*AAGACA1

Release history

Release3.893.90
Date2024-10-092024-11-06
StatusUpdated, 2 parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Kink-turn (10)
  • Kink-turn with non-sequential stacking (6)
    • Basepair signature
    cWW-tSH-tSS-tHS-R-cWW-cWW-R
    Heat map statistics
    Min 0.05 | Avg 0.39 | Max 0.69
    Help

    Coloring options:

    IL_6UFH_001:IL_6UFH_001 = 0IL_6UFH_001:IL_4WF9_004 = 0.3114IL_6UFH_001:IL_8VTW_004 = 0.2591IL_6UFH_001:IL_6UFG_001 = 0.2604IL_6UFH_001:IL_6UFM_001 = 0.2157IL_6UFH_001:IL_1T0K_001 = 0.2803IL_6UFH_001:IL_4GXY_005 = 0.2538IL_6UFH_001:IL_4V88_434 = 0.2619IL_6UFH_001:IL_5J7L_035 = 0.3387IL_6UFH_001:IL_4V9F_004 = 0.3961IL_6UFH_001:IL_6CZR_123 = 0.6377IL_6UFH_001:IL_4LFB_011 = 0.6129IL_6UFH_001:IL_5J7L_014 = 0.6429IL_6UFH_001:IL_8C3A_410 = 0.6254IL_6UFH_001:IL_4V88_402 = 0.6204IL_6UFH_001:IL_3RW6_002 = 0.6422IL_4WF9_004:IL_6UFH_001 = 0.3114IL_4WF9_004:IL_4WF9_004 = 0IL_4WF9_004:IL_8VTW_004 = 0.1586IL_4WF9_004:IL_6UFG_001 = 0.1791IL_4WF9_004:IL_6UFM_001 = 0.1997IL_4WF9_004:IL_1T0K_001 = 0.2IL_4WF9_004:IL_4GXY_005 = 0.2311IL_4WF9_004:IL_4V88_434 = 0.3519IL_4WF9_004:IL_5J7L_035 = 0.2338IL_4WF9_004:IL_4V9F_004 = 0.3401IL_4WF9_004:IL_6CZR_123 = 0.668IL_4WF9_004:IL_4LFB_011 = 0.6938IL_4WF9_004:IL_5J7L_014 = 0.659IL_4WF9_004:IL_8C3A_410 = 0.6412IL_4WF9_004:IL_4V88_402 = 0.642IL_4WF9_004:IL_3RW6_002 = 0.6823IL_8VTW_004:IL_6UFH_001 = 0.2591IL_8VTW_004:IL_4WF9_004 = 0.1586IL_8VTW_004:IL_8VTW_004 = 0IL_8VTW_004:IL_6UFG_001 = 0.112IL_8VTW_004:IL_6UFM_001 = 0.1198IL_8VTW_004:IL_1T0K_001 = 0.1582IL_8VTW_004:IL_4GXY_005 = 0.175IL_8VTW_004:IL_4V88_434 = 0.2098IL_8VTW_004:IL_5J7L_035 = 0.2031IL_8VTW_004:IL_4V9F_004 = 0.249IL_8VTW_004:IL_6CZR_123 = 0.6264IL_8VTW_004:IL_4LFB_011 = 0.6138IL_8VTW_004:IL_5J7L_014 = 0.6212IL_8VTW_004:IL_8C3A_410 = 0.6IL_8VTW_004:IL_4V88_402 = 0.596IL_8VTW_004:IL_3RW6_002 = 0.6371IL_6UFG_001:IL_6UFH_001 = 0.2604IL_6UFG_001:IL_4WF9_004 = 0.1791IL_6UFG_001:IL_8VTW_004 = 0.112IL_6UFG_001:IL_6UFG_001 = 0IL_6UFG_001:IL_6UFM_001 = 0.0999IL_6UFG_001:IL_1T0K_001 = 0.1631IL_6UFG_001:IL_4GXY_005 = 0.1657IL_6UFG_001:IL_4V88_434 = 0.1949IL_6UFG_001:IL_5J7L_035 = 0.2094IL_6UFG_001:IL_4V9F_004 = 0.2764IL_6UFG_001:IL_6CZR_123 = 0.619IL_6UFG_001:IL_4LFB_011 = 0.6011IL_6UFG_001:IL_5J7L_014 = 0.5995IL_6UFG_001:IL_8C3A_410 = 0.5908IL_6UFG_001:IL_4V88_402 = 0.5863IL_6UFG_001:IL_3RW6_002 = 0.6166IL_6UFM_001:IL_6UFH_001 = 0.2157IL_6UFM_001:IL_4WF9_004 = 0.1997IL_6UFM_001:IL_8VTW_004 = 0.1198IL_6UFM_001:IL_6UFG_001 = 0.0999IL_6UFM_001:IL_6UFM_001 = 0IL_6UFM_001:IL_1T0K_001 = 0.1527IL_6UFM_001:IL_4GXY_005 = 0.1621IL_6UFM_001:IL_4V88_434 = 0.1831IL_6UFM_001:IL_5J7L_035 = 0.2326IL_6UFM_001:IL_4V9F_004 = 0.2617IL_6UFM_001:IL_6CZR_123 = 0.6053IL_6UFM_001:IL_4LFB_011 = 0.5878IL_6UFM_001:IL_5J7L_014 = 0.593IL_6UFM_001:IL_8C3A_410 = 0.574IL_6UFM_001:IL_4V88_402 = 0.5677IL_6UFM_001:IL_3RW6_002 = 0.5985IL_1T0K_001:IL_6UFH_001 = 0.2803IL_1T0K_001:IL_4WF9_004 = 0.2IL_1T0K_001:IL_8VTW_004 = 0.1582IL_1T0K_001:IL_6UFG_001 = 0.1631IL_1T0K_001:IL_6UFM_001 = 0.1527IL_1T0K_001:IL_1T0K_001 = 0IL_1T0K_001:IL_4GXY_005 = 0.1755IL_1T0K_001:IL_4V88_434 = 0.2236IL_1T0K_001:IL_5J7L_035 = 0.2478IL_1T0K_001:IL_4V9F_004 = 0.2823IL_1T0K_001:IL_6CZR_123 = 0.6317IL_1T0K_001:IL_4LFB_011 = 0.6208IL_1T0K_001:IL_5J7L_014 = 0.6263IL_1T0K_001:IL_8C3A_410 = 0.6028IL_1T0K_001:IL_4V88_402 = 0.5963IL_1T0K_001:IL_3RW6_002 = 0.6246IL_4GXY_005:IL_6UFH_001 = 0.2538IL_4GXY_005:IL_4WF9_004 = 0.2311IL_4GXY_005:IL_8VTW_004 = 0.175IL_4GXY_005:IL_6UFG_001 = 0.1657IL_4GXY_005:IL_6UFM_001 = 0.1621IL_4GXY_005:IL_1T0K_001 = 0.1755IL_4GXY_005:IL_4GXY_005 = 0IL_4GXY_005:IL_4V88_434 = 0.2477IL_4GXY_005:IL_5J7L_035 = 0.2861IL_4GXY_005:IL_4V9F_004 = 0.348IL_4GXY_005:IL_6CZR_123 = 0.6809IL_4GXY_005:IL_4LFB_011 = 0.6628IL_4GXY_005:IL_5J7L_014 = 0.6692IL_4GXY_005:IL_8C3A_410 = 0.6518IL_4GXY_005:IL_4V88_402 = 0.6439IL_4GXY_005:IL_3RW6_002 = 0.6486IL_4V88_434:IL_6UFH_001 = 0.2619IL_4V88_434:IL_4WF9_004 = 0.3519IL_4V88_434:IL_8VTW_004 = 0.2098IL_4V88_434:IL_6UFG_001 = 0.1949IL_4V88_434:IL_6UFM_001 = 0.1831IL_4V88_434:IL_1T0K_001 = 0.2236IL_4V88_434:IL_4GXY_005 = 0.2477IL_4V88_434:IL_4V88_434 = 0IL_4V88_434:IL_5J7L_035 = 0.2194IL_4V88_434:IL_4V9F_004 = 0.4019IL_4V88_434:IL_6CZR_123 = 0.5608IL_4V88_434:IL_4LFB_011 = 0.5442IL_4V88_434:IL_5J7L_014 = 0.5529IL_4V88_434:IL_8C3A_410 = 0.5363IL_4V88_434:IL_4V88_402 = 0.5314IL_4V88_434:IL_3RW6_002 = 0.5482IL_5J7L_035:IL_6UFH_001 = 0.3387IL_5J7L_035:IL_4WF9_004 = 0.2338IL_5J7L_035:IL_8VTW_004 = 0.2031IL_5J7L_035:IL_6UFG_001 = 0.2094IL_5J7L_035:IL_6UFM_001 = 0.2326IL_5J7L_035:IL_1T0K_001 = 0.2478IL_5J7L_035:IL_4GXY_005 = 0.2861IL_5J7L_035:IL_4V88_434 = 0.2194IL_5J7L_035:IL_5J7L_035 = 0IL_5J7L_035:IL_4V9F_004 = 0.2359IL_5J7L_035:IL_6CZR_123 = 0.5677IL_5J7L_035:IL_4LFB_011 = 0.5638IL_5J7L_035:IL_5J7L_014 = 0.5581IL_5J7L_035:IL_8C3A_410 = 0.5455IL_5J7L_035:IL_4V88_402 = 0.5457IL_5J7L_035:IL_3RW6_002 = 0.5885IL_4V9F_004:IL_6UFH_001 = 0.3961IL_4V9F_004:IL_4WF9_004 = 0.3401IL_4V9F_004:IL_8VTW_004 = 0.249IL_4V9F_004:IL_6UFG_001 = 0.2764IL_4V9F_004:IL_6UFM_001 = 0.2617IL_4V9F_004:IL_1T0K_001 = 0.2823IL_4V9F_004:IL_4GXY_005 = 0.348IL_4V9F_004:IL_4V88_434 = 0.4019IL_4V9F_004:IL_5J7L_035 = 0.2359IL_4V9F_004:IL_4V9F_004 = 0IL_4V9F_004:IL_6CZR_123 = 0.582IL_4V9F_004:IL_4LFB_011 = 0.5855IL_4V9F_004:IL_5J7L_014 = 0.6092IL_4V9F_004:IL_8C3A_410 = 0.5467IL_4V9F_004:IL_4V88_402 = 0.5482IL_4V9F_004:IL_3RW6_002 = 0.6089IL_6CZR_123:IL_6UFH_001 = 0.6377IL_6CZR_123:IL_4WF9_004 = 0.668IL_6CZR_123:IL_8VTW_004 = 0.6264IL_6CZR_123:IL_6UFG_001 = 0.619IL_6CZR_123:IL_6UFM_001 = 0.6053IL_6CZR_123:IL_1T0K_001 = 0.6317IL_6CZR_123:IL_4GXY_005 = 0.6809IL_6CZR_123:IL_4V88_434 = 0.5608IL_6CZR_123:IL_5J7L_035 = 0.5677IL_6CZR_123:IL_4V9F_004 = 0.582IL_6CZR_123:IL_6CZR_123 = 0IL_6CZR_123:IL_4LFB_011 = 0.1192IL_6CZR_123:IL_5J7L_014 = 0.1696IL_6CZR_123:IL_8C3A_410 = 0.169IL_6CZR_123:IL_4V88_402 = 0.1866IL_6CZR_123:IL_3RW6_002 = 0.305IL_4LFB_011:IL_6UFH_001 = 0.6129IL_4LFB_011:IL_4WF9_004 = 0.6938IL_4LFB_011:IL_8VTW_004 = 0.6138IL_4LFB_011:IL_6UFG_001 = 0.6011IL_4LFB_011:IL_6UFM_001 = 0.5878IL_4LFB_011:IL_1T0K_001 = 0.6208IL_4LFB_011:IL_4GXY_005 = 0.6628IL_4LFB_011:IL_4V88_434 = 0.5442IL_4LFB_011:IL_5J7L_035 = 0.5638IL_4LFB_011:IL_4V9F_004 = 0.5855IL_4LFB_011:IL_6CZR_123 = 0.1192IL_4LFB_011:IL_4LFB_011 = 0IL_4LFB_011:IL_5J7L_014 = 0.1359IL_4LFB_011:IL_8C3A_410 = 0.1497IL_4LFB_011:IL_4V88_402 = 0.168IL_4LFB_011:IL_3RW6_002 = 0.3115IL_5J7L_014:IL_6UFH_001 = 0.6429IL_5J7L_014:IL_4WF9_004 = 0.659IL_5J7L_014:IL_8VTW_004 = 0.6212IL_5J7L_014:IL_6UFG_001 = 0.5995IL_5J7L_014:IL_6UFM_001 = 0.593IL_5J7L_014:IL_1T0K_001 = 0.6263IL_5J7L_014:IL_4GXY_005 = 0.6692IL_5J7L_014:IL_4V88_434 = 0.5529IL_5J7L_014:IL_5J7L_035 = 0.5581IL_5J7L_014:IL_4V9F_004 = 0.6092IL_5J7L_014:IL_6CZR_123 = 0.1696IL_5J7L_014:IL_4LFB_011 = 0.1359IL_5J7L_014:IL_5J7L_014 = 0IL_5J7L_014:IL_8C3A_410 = 0.1275IL_5J7L_014:IL_4V88_402 = 0.1459IL_5J7L_014:IL_3RW6_002 = 0.2846IL_8C3A_410:IL_6UFH_001 = 0.6254IL_8C3A_410:IL_4WF9_004 = 0.6412IL_8C3A_410:IL_8VTW_004 = 0.6IL_8C3A_410:IL_6UFG_001 = 0.5908IL_8C3A_410:IL_6UFM_001 = 0.574IL_8C3A_410:IL_1T0K_001 = 0.6028IL_8C3A_410:IL_4GXY_005 = 0.6518IL_8C3A_410:IL_4V88_434 = 0.5363IL_8C3A_410:IL_5J7L_035 = 0.5455IL_8C3A_410:IL_4V9F_004 = 0.5467IL_8C3A_410:IL_6CZR_123 = 0.169IL_8C3A_410:IL_4LFB_011 = 0.1497IL_8C3A_410:IL_5J7L_014 = 0.1275IL_8C3A_410:IL_8C3A_410 = 0IL_8C3A_410:IL_4V88_402 = 0.0528IL_8C3A_410:IL_3RW6_002 = 0.277IL_4V88_402:IL_6UFH_001 = 0.6204IL_4V88_402:IL_4WF9_004 = 0.642IL_4V88_402:IL_8VTW_004 = 0.596IL_4V88_402:IL_6UFG_001 = 0.5863IL_4V88_402:IL_6UFM_001 = 0.5677IL_4V88_402:IL_1T0K_001 = 0.5963IL_4V88_402:IL_4GXY_005 = 0.6439IL_4V88_402:IL_4V88_434 = 0.5314IL_4V88_402:IL_5J7L_035 = 0.5457IL_4V88_402:IL_4V9F_004 = 0.5482IL_4V88_402:IL_6CZR_123 = 0.1866IL_4V88_402:IL_4LFB_011 = 0.168IL_4V88_402:IL_5J7L_014 = 0.1459IL_4V88_402:IL_8C3A_410 = 0.0528IL_4V88_402:IL_4V88_402 = 0IL_4V88_402:IL_3RW6_002 = 0.2642IL_3RW6_002:IL_6UFH_001 = 0.6422IL_3RW6_002:IL_4WF9_004 = 0.6823IL_3RW6_002:IL_8VTW_004 = 0.6371IL_3RW6_002:IL_6UFG_001 = 0.6166IL_3RW6_002:IL_6UFM_001 = 0.5985IL_3RW6_002:IL_1T0K_001 = 0.6246IL_3RW6_002:IL_4GXY_005 = 0.6486IL_3RW6_002:IL_4V88_434 = 0.5482IL_3RW6_002:IL_5J7L_035 = 0.5885IL_3RW6_002:IL_4V9F_004 = 0.6089IL_3RW6_002:IL_6CZR_123 = 0.305IL_3RW6_002:IL_4LFB_011 = 0.3115IL_3RW6_002:IL_5J7L_014 = 0.2846IL_3RW6_002:IL_8C3A_410 = 0.277IL_3RW6_002:IL_4V88_402 = 0.2642IL_3RW6_002:IL_3RW6_002 = 0IL_6UFH_001IL_4WF9_004IL_8VTW_004IL_6UFG_001IL_6UFM_001IL_1T0K_001IL_4GXY_005IL_4V88_434IL_5J7L_035IL_4V9F_004IL_6CZR_123IL_4LFB_011IL_5J7L_014IL_8C3A_410IL_4V88_402IL_3RW6_002Discrepancy0.000.100.200.300.400.500.60
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