Motif IL_45067.5 Version IL_45067.5 of this group appears in releases 3.89 to 3.90

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7	break		8		9		10		11		12	1-5	1-12	2-3	2-11	4-11	5-9	5-10	5-12	6-9	6-10	7-8
1	IL_6UFH_001	6UFH	0.2157	1	Kink-turn	A	RNA (167-MER)	C	3	A	4	U	5	G	7	A	8	U	9	C	10	*	G	23	G	24	G	25	A	26	G	27	ncsS	cWW		ntsS	tSH				tHS		cWW
2	IL_4WF9_004	4WF9	0.1997	1	Kink-turn	X	LSU rRNA	C	97	U	98	U	99	G	101	A	102	U	103	C	104	*	G	81	G	82	G	83	A	84	G	85		cWW		ntsS	ntSH		ntSs		tHS		cWW
3	IL_8VTW_004	8VTW	0.1198	1	Kink-turn	1A	LSU rRNA	C	97	G	98	U	99	G	102	A	103	U	104	C	105	*	G	81	G	82	G	83	A	84	G	85		cWW		tsS	tSH			ntSs	tHS		cWW
4	IL_6UFG_001	6UFG	0.0999	1	Kink-turn	A	RNA (166-MER)	C	3	A	4	U	5	G	7	A	8	U	9	C	10	*	G	23	G	24	G	25	A	26	G	27		cWW		ntsS	tSH				tHS		cWW
5	IL_6UFM_001	6UFM	0.0000	1	Kink-turn	B	RNA (98-MER)	C	3	G	4	A	5	G	7	A	8	U	9	C	10	*	G	23	G	24	G	25	A	26	G	27		cWW		tsS	tSH				tHS		cWW
6	IL_1T0K_001	1T0K	0.1527	1	Kink-turn	D+C	RNA (16-mer)	C	54	A	55	G	56	G	58	A	59	U	60	G	61	*	C	9	G	10	G	11	A	12	G	13		cWW		tsS	ntSH				ntHS		cWW
7	IL_4GXY_005	4GXY	0.1621	1	Kink-turn	A	Cobalamin riboswitch	C	139	G	140	A	141	G	143	A	144	U	145	C	146	*	G	82	G	83	G	84	A	85	G	86	ncsS	cWW		ntsS	tSH				tHS		cWW
8	IL_4V88_434	4V88	0.1831	1	Kink-turn	A6	SSU rRNA	C	910	U	911	U	912	G	914	A	915	U	916	U	917	*	G	895	U	896	C	897	A	898	G	899	ncsS	cWW		ntsS	tSH			tSs			ncWW
9	IL_5J7L_035	5J7L	0.2326	1	Kink-turn	AA	SSU rRNA	C	699	G	700	U	701	G	703	A	704	G	705	A	706	*	U	684	G	685	U	686	A	687	G	688		cWW		ntsS	ntSH		tHW		tHS		cWW
10	IL_4V9F_004	4V9F	0.2617	1	Kink-turn	0	LSU rRNA	C	93	G	94	A	95	G	97	A	98	A	99	C	100	*	G	77	G	78	G	79	A	80	G	81		cWW		ntsS	tSH		ntHS		tHS		cWW
11	IL_6CZR_123	6CZR	0.6053	2	Kink-turn with non-sequential stacking	1a	SSU rRNA	C	273	G	274	A	275	G	277	A	278	C	279	G	280	*	C	238	A	239	C	241	A	242	G	243		cWW		ntsS	tSH	tHW				cwW	cWW
12	IL_4LFB_011	4LFB	0.5878	2	Kink-turn with non-sequential stacking	A	SSU rRNA	C	277	G	278	A	279	G	281	A	282	C	283	G	284	*	C	242	A	243	C	245	A	246	G	247	ncsS	cWW		ntsS	tSH	tHW				cwW	cWW
13	IL_5J7L_014	5J7L	0.5930	2	Kink-turn with non-sequential stacking	AA	SSU rRNA	C	277	G	278	A	279	G	281	A	282	U	283	C	284	*	G	242	A	243	U	245	A	246	G	247	ncsS	cWW	ncSH		tSH	tHW				cWw	cWW
14	IL_8C3A_410	8C3A	0.5740	2	Kink-turn with non-sequential stacking	CM	SSU rRNA	U	346	U	347	U	348	A	350	A	351	C	352	G	353	*	U	309	A	310	C	312	A	313	A	314	ncsS	cWW		tsS	ntSH	tHW				cwW	cWW
15	IL_4V88_402	4V88	0.5677	2	Kink-turn with non-sequential stacking	A6	SSU rRNA	U	348	U	349	U	350	A	352	A	353	C	354	G	355	*	U	311	A	312	C	314	A	315	A	316	ncsS	cWW		tsS	ntSH	tHW				cwW	cWW
16	IL_3RW6_002	3RW6	0.5985	4	Kink-turn with non-sequential stacking	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	C	43	A	44	A	45	G	47	A	48	C	49	G	50	*	U	11	A	12	C	16	A	17	G	18	ncsS	cWW		tsS	tSH	tHW				cwW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAUCGAUC*GGGAG	2
CGACGACG*CAUCAG	2
UUUCAACG*UAUCAA	2
CUUUGAUC*GGGAG	1
CGUGGAUC*GGGAG	1
CGACGAUC*GGGAG	1
CAGAGAUG*CGGAG	1
CGAGGAUC*GGGAG	1
CUUGGAUU*GUCAG	1
CGUAGAGA*UGUAG	1
CGAAGAAC*GGGAG	1
CGACGAUC*GAUUAG	1
CAAUGACG*UAAGACAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AUCGAU*GGA	2
GACGAC*AUCA	2
UUCAAC*AUCA	2
UUUGAU*GGA	1
GUGGAU*GGA	1
GACGAU*GGA	1
AGAGAU*GGA	1
GAGGAU*GGA	1
UUGGAU*UCA	1
GUAGAG*GUA	1
GAAGAA*GGA	1
GACGAU*AUUA	1
AAUGAC*AAGACA	1

Release history

Release	3.89	3.90
Date	2024-10-09	2024-11-06
Status	Updated, 2 parents	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Kink-turn (10)
Kink-turn with non-sequential stacking (6)
Basepair signature: cWW-tSH-tSS-tHS-R-cWW-cWW-R
Heat map statistics: Min 0.05 | Avg 0.39 | Max 0.69

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Coloring options: Nucleotide numbers

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