IL_3JAH_268

3D structure

PDB id

3JAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAH_268 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.1498

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

3JAH|1|9|C|1742
3JAH|1|9|G|1743
3JAH|1|9|G|1744
3JAH|1|9|A|1745
3JAH|1|9|U|1746
*
3JAH|1|9|A|1788
3JAH|1|9|G|1789
3JAH|1|9|A|1790
3JAH|1|9|A|1791
3JAH|1|9|G|1792

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain GG

eS6

Chain II

eS8

Chain W

eL24