IL_3JAI_105

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

3JAI|1|5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_105 not in the Motif Atlas

Homologous match to IL_5TBW_077

Geometric discrepancy: 0.0966

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

3JAI|1|5|A|2850
3JAI|1|5|G|2851
3JAI|1|5|U|2852
3JAI|1|5|C|2853
3JAI|1|5|G|2854
3JAI|1|5|G|2855
*
3JAI|1|5|C|3837
3JAI|1|5|U|3838
3JAI|1|5|G|3839
3JAI|1|5|U|3840

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain V

uL14