3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
AGUCGG*CUGU
Length
10 nucleotides
Bulged bases
3JAI|1|5|G|3839
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAI_105 not in the Motif Atlas
Homologous match to IL_5TBW_077
Geometric discrepancy: 0.0966
The information below is about IL_5TBW_077
Detailed Annotation
Intercalated tWH
Broad Annotation
Intercalated tWH
Motif group
IL_06455.1
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
7

Unit IDs

3JAI|1|5|A|2850
3JAI|1|5|G|2851
3JAI|1|5|U|2852
3JAI|1|5|C|2853
3JAI|1|5|G|2854
3JAI|1|5|G|2855
*
3JAI|1|5|C|3837
3JAI|1|5|U|3838
3JAI|1|5|G|3839
3JAI|1|5|U|3840

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain B
uL3
Chain V
uL14

Coloring options:


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