Motif IL_06455.1 Version IL_06455.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 1-9 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_062 | 7A0S | 0.1071 | 1 | Intercalated tWH | X | LSU rRNA | A | 1686 | C | 1687 | U | 1688 | U | 1689 | U | 1690 | G | 1691 | * | C | 1973 | U | 1974 | U | 1976 | cWW | cWW |
| 2 | IL_8VTW_066 | 8VTW | 0.0812 | 1 | 1A | LSU rRNA | A | 1669 | C | 1670 | U | 1671 | C | 1672 | U | 1673 | G | 1674 | * | C | 1990 | U | 1991 | U | 1993 | cWW | cWW | |
| 3 | IL_5J7L_307 | 5J7L | 0.0000 | 1 | Intercalated tWH | DA | LSU rRNA | A | 1669 | C | 1670 | U | 1671 | A | 1672 | G | 1673 | G | 1674 | * | C | 1990 | U | 1991 | U | 1993 | cWW | cWW |
| 4 | IL_4WF9_065 | 4WF9 | 0.0730 | 1 | Intercalated tWH | X | LSU rRNA | A | 1713 | C | 1714 | U | 1715 | C | 1716 | G | 1717 | G | 1718 | * | C | 2017 | U | 2018 | U | 2020 | cWW | cWW |
| 5 | IL_4V9F_062 | 4V9F | 0.1027 | 1 | Intercalated tWH | 0 | LSU rRNA | A | 1747 | U | 1748 | U | 1749 | C | 1750 | G | 1751 | G | 1752 | * | C | 2031 | U | 2032 | U | 2034 | cWW | cWW |
| 6 | IL_5TBW_077 | 5TBW | 0.1363 | 1 | Intercalated tWH | 1 | LSU rRNA | A | 1901 | G | 1902 | U | 1903 | C | 1904 | G | 1905 | G | 1906 | * | C | 2333 | U | 2334 | U | 2336 | cWW | cWW |
| 7 | IL_8C3A_083 | 8C3A | 0.1482 | 1 | 1 | LSU rRNA | A | 1897 | G | 1898 | U | 1899 | C | 1900 | G | 1901 | G | 1902 | * | C | 2311 | U | 2312 | U | 2314 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGUCGG*CUGU | 2 |
| ACUUUG*CUGU | 1 |
| ACUCUG*CUGU | 1 |
| ACUAGG*CUGU | 1 |
| ACUCGG*CUGU | 1 |
| AUUCGG*CUGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUCG*UG | 2 |
| CUUU*UG | 1 |
| CUCU*UG | 1 |
| CUAG*UG | 1 |
| CUCG*UG | 1 |
| UUCG*UG | 1 |
- Annotations
-
- Intercalated tWH (5)
- (2)
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Heat map statistics
- Min 0.07 | Avg 0.11 | Max 0.18
Coloring options: