3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
CGUAAC*GGAUAAG
Length
13 nucleotides
Bulged bases
3JAI|1|5|U|2880
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAI_106 not in the Motif Atlas
Geometric match to IL_4V9F_063
Geometric discrepancy: 0.0948
The information below is about IL_4V9F_063
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_47346.2
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

3JAI|1|5|C|2867
3JAI|1|5|G|2868
3JAI|1|5|U|2869
3JAI|1|5|A|2870
3JAI|1|5|A|2871
3JAI|1|5|C|2872
*
3JAI|1|5|G|2877
3JAI|1|5|G|2878
3JAI|1|5|A|2879
3JAI|1|5|U|2880
3JAI|1|5|A|2881
3JAI|1|5|A|2882
3JAI|1|5|G|2883

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 9
Small subunit ribosomal RNA; SSU rRNA
Chain n
eL41
Chain p
eL43

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1297 s