IL_3JAI_119

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

3JAI|1|5|A|3785, 3JAI|1|5|C|3791, 3JAI|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_119 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1247

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

3JAI|1|5|C|3781
3JAI|1|5|C|3782
3JAI|1|5|A|3783
3JAI|1|5|A|3784
3JAI|1|5|A|3785
3JAI|1|5|U|3786
3JAI|1|5|G|3787
3JAI|1|5|C|3788
3JAI|1|5|C|3789
3JAI|1|5|U|3790
3JAI|1|5|C|3791
3JAI|1|5|G|3792
*
3JAI|1|5|C|3808
3JAI|1|5|G|3809
3JAI|1|5|C|3810
3JAI|1|5|G|3811

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain ii

eRF1

Chain n

eL41