IL_3JAI_150

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

3JAI|1|5|U|4634, 3JAI|1|5|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_150 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.2532

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

3JAI|1|5|U|4632
3JAI|1|5|G|4633
3JAI|1|5|U|4634
3JAI|1|5|A|4635
3JAI|1|5|U|4636
3JAI|1|5|G|4637
*
3JAI|1|5|C|4662
3JAI|1|5|G|4663
3JAI|1|5|A|4664
3JAI|1|5|A|4665
3JAI|1|5|G|4666

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain W

eL24

Chain d

eL31