Motif IL_17136.4 Version IL_17136.4 of this group appears in releases 3.89 to 3.89

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-9	3-7	3-8	4-7	5-6
1	IL_4V9F_055	4V9F	0.2321	0	tSH-tHW-tHS	0	LSU rRNA	U	1639	C	1640	A	1641	A	1642	C	1643	*	G	1542	G	1543	U	1544	C	1545	G	1546	cWW	tSH		tHW	tHS	cWW
2	IL_8C3A_428	8C3A	0.1503	0	tSH-tHW-tHS (H)	CM	SSU rRNA	U	953	C	954	A	955	A	956	G	957	*	C	625	G	626	U	627	A	628	G	629	cWW	tSH		tHW	tHS	cWW
3	IL_4V88_418	4V88	0.1563	0	tSH-tHW-tHS	A6	SSU rRNA	U	968	C	969	A	970	A	971	G	972	*	C	627	G	628	U	629	A	630	G	631	cWW	tSH		tHW	tHS	cWW
4	IL_4V88_436	4V88	0.1036	0	tSH-tHW-tHS	A6	SSU rRNA	C	990	G	991	A	992	A	993	G	994	*	C	1010	G	1011	U	1012	A	1013	G	1014	cWW	tSH		tHW	tHS	cWW
5	IL_8C3A_442	8C3A	0.0000	0	tSH-tHW-tHS (H)	CM	SSU rRNA	C	975	G	976	A	977	A	978	G	979	*	C	995	G	996	U	997	A	998	G	999	cWW	tSH		tHW	tHS	cWW
6	IL_5J7L_037	5J7L	0.0925	0	tSH-tHW-tHS	AA	SSU rRNA	C	779	A	780	A	781	A	782	C	783	*	G	799	G	800	U	801	A	802	G	803	cWW	tSH		tHW	tHS	cWW
7	IL_4LFB_033	4LFB	0.1000	0	tSH-tHW-tHS	A	SSU rRNA	C	779	A	780	A	781	A	782	C	783	*	G	799	G	800	U	801	A	802	G	803	cWW	tSH		tHW	tHS	cWW
8	IL_6CZR_145	6CZR	0.1345	0	tSH-tHW-tHS	1a	SSU rRNA	C	763	A	764	A	765	A	766	C	767	*	G	783	G	784	U	785	A	786	G	787	cWW	tSH		tHW	tHS	cWW
9	IL_6CZR_135	6CZR	0.1555	0	tSH-tHW-tHS	1a	SSU rRNA	U	741	G	742	A	743	G	744	G	745	*	U	564	G	565	U	566	A	567	G	568	cWW	tSH		tHW	ntHS	cWW
10	IL_4LFB_023	4LFB	0.1531	0	tSH-tHW-tHS	A	SSU rRNA	U	757	G	758	A	759	G	760	G	761	*	U	580	G	581	U	582	A	583	G	584	cWW	tSH		tHW	tHS	cWW
11	IL_5J7L_027	5J7L	0.1847	0	tSH-tHW-tHS	AA	SSU rRNA	U	757	C	758	A	759	G	760	G	761	*	C	580	G	581	C	582	A	583	G	584	cWW	tSH		tHW	tHS	cWW
12	IL_4WF9_052	4WF9	0.2219	0	tSH-tHW-tHS	X	LSU rRNA	U	1394	G	1395	A	1396	G	1397	G	1398	*	C	1407	G	1408	U	1409	A	1410	G	1411	cWW			ntHW	ntHS	cWW
13	IL_5J7L_293	5J7L	0.2312	0	tSH-tHW-tHS	DA	LSU rRNA	C	1357	G	1358	A	1359	G	1360	G	1361	*	C	1370	G	1371	U	1372	A	1373	G	1374	cWW	tSH		tHW	tHS	cWW
14	IL_7A0S_049	7A0S	0.2706	0	tSH-tHW-tHS	X	LSU rRNA	U	1370	G	1371	A	1372	G	1373	G	1374	*	C	1383	G	1384	C	1385	A	1386	G	1387	cWW	tSH		tHW	tHS	cWW
15	IL_4V9F_022	4V9F	0.2529	0	tSH-tHW-tHS	0	LSU rRNA	C	719	G	720	A	721	G	722	G	723	*	C	705	G	706	C	707	A	708	G	709	cWW	tSH		tHW	tHS	cWW
16	IL_2R8S_006	2R8S	0.6295	0	UAA/GAN variation	R	P4-P6 RNA RIBOZYME DOMAIN	U	253	G	254	C	255	A	256	G	257	*	C	216	C	217	A	218	A	219	G	220	cWW	tSH			tHS	cWW
17	IL_5TBW_118	5TBW	0.8293	1	UAA/GAN related	1	LSU rRNA	U	3054	U	3055	U	3056	U	3057	G	3059	*	C	3084	G	3085	A	3086	A	3087	G	3088	cWW				ntWS	cWW
18	IL_8C3A_127	8C3A	0.9321	1	UAA/GAN related (H)	1	LSU rRNA	C	3056	G	3057	A	3058	A	3059	G	3060	*	U	3026	U	3027	U	3028	U	3029	G	3031	cWW	ntSW	tHW			cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAAAC*GGUAG	3
UCAAG*CGUAG	2
CGAAG*CGUAG	2
UGAGG*UGUAG	2
UCAAC*GGUCG	1
UCAGG*CGCAG	1
UGAGG*CGUAG	1
CGAGG*CGUAG	1
UGAGG*CGCAG	1
CGAGG*CGCAG	1
UGCAG*CCAAG	1
UUUUUG*CGAAG	1
CGAAG*UUUUUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAG*GUA	4
AAA*GUA	3
CAA*GUA	2
GAA*GUA	2
GAG*GCA	2
CAA*GUC	1
CAG*GCA	1
GCA*CAA	1
UUUU*GAA	1
GAA*UUUU	1

Release history

Release	3.89
Date	2024-10-09
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: tSH-tHW-tHS (13)
tSH-tHW-tHS (H) (2)
UAA/GAN variation (1)
UAA/GAN related (1)
UAA/GAN related (H) (1)
Basepair signature: cWW-R-L-tHS-tHW-cWW
Heat map statistics: Min 0.07 | Avg 0.36 | Max 0.97

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Coloring options: Nucleotide numbers

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