IL_3JAI_153

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

3JAI|1|5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_153 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.2447

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

3JAI|1|5|A|4681
3JAI|1|5|U|4682
3JAI|1|5|U|4683
3JAI|1|5|A|4684
3JAI|1|5|U|4685
*
3JAI|1|5|A|4705
3JAI|1|5|G|4706
3JAI|1|5|A|4707
3JAI|1|5|A|4708
3JAI|1|5|U|4709

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40