IL_3JAI_155

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GAGC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_155 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.2889

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3JAI|1|5|G|4743
3JAI|1|5|A|4744
3JAI|1|5|G|4745
3JAI|1|5|C|4746
*
3JAI|1|5|G|4954
3JAI|1|5|A|4955
3JAI|1|5|A|4956
3JAI|1|5|C|4957

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain f

eL33