3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
GGG*CGAUUC
Length
9 nucleotides
Bulged bases
3JAI|1|9|U|428
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAI_195 not in the Motif Atlas
Homologous match to IL_4V88_404
Geometric discrepancy: 0.113
The information below is about IL_4V88_404
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_11347.3
Basepair signature
cWW-L-R-L-cWW-L
Number of instances in this motif group
2

Unit IDs

3JAI|1|9|G|411
3JAI|1|9|G|412
3JAI|1|9|G|413
*
3JAI|1|9|C|424
3JAI|1|9|G|425
3JAI|1|9|A|426
3JAI|1|9|U|427
3JAI|1|9|U|428
3JAI|1|9|C|429

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain EE
eS4
Chain JJ
uS4
Chain XX
uS12

Coloring options:


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