IL_3JAI_203

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_203 not in the Motif Atlas

Geometric match to IL_6JDV_001

Geometric discrepancy: 0.2512

The information below is about IL_6JDV_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

3JAI|1|9|U|566
3JAI|1|9|C|567
3JAI|1|9|C|568
3JAI|1|9|A|569
*
3JAI|1|9|U|581
3JAI|1|9|U|582
3JAI|1|9|A|583
3JAI|1|9|A|584

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

uS4

Chain YY

eS24