3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
AC*GAAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAI_213 not in the Motif Atlas
Homologous match to IL_4V88_423
Geometric discrepancy: 0.1344
The information below is about IL_4V88_423
Detailed Annotation
Major groove minor groove platform; mini C-loop
Broad Annotation
No text annotation
Motif group
IL_68140.1
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
19

Unit IDs

3JAI|1|9|A|802
3JAI|1|9|C|803
*
3JAI|1|9|G|860
3JAI|1|9|A|861
3JAI|1|9|A|862
3JAI|1|9|U|863

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain HH
eS7
Chain LL
uS17
Chain WW
uS8
Chain XX
uS12

Coloring options:


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