IL_3JAI_216

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GACCGC*GAGGC

Length

11 nucleotides

Bulged bases

3JAI|1|9|C|877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_216 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3524

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

3JAI|1|9|G|874
3JAI|1|9|A|875
3JAI|1|9|C|876
3JAI|1|9|C|877
3JAI|1|9|G|878
3JAI|1|9|C|879
*
3JAI|1|9|G|907
3JAI|1|9|A|908
3JAI|1|9|G|909
3JAI|1|9|G|910
3JAI|1|9|C|911

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain HH

eS7

Chain LL

uS17

Chain R

eL19