IL_3JAI_228

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_228 not in the Motif Atlas

Geometric match to IL_7RQB_032

Geometric discrepancy: 0.3309

The information below is about IL_7RQB_032

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_80097.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

3JAI|1|9|G|1108
3JAI|1|9|C|1109
3JAI|1|9|G|1110
*
3JAI|1|9|C|1123
3JAI|1|9|C|1124

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain AA

uS2

Chain BB

eS1

Chain RR

eS17

Chain bb

eS27