3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
GGAGUAUG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAI_229 not in the Motif Atlas
Homologous match to IL_4V88_440
Geometric discrepancy: 0.0924
The information below is about IL_4V88_440
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.1
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
5

Unit IDs

3JAI|1|9|G|1168
3JAI|1|9|G|1169
3JAI|1|9|A|1170
3JAI|1|9|G|1171
3JAI|1|9|U|1172
3JAI|1|9|A|1173
3JAI|1|9|U|1174
3JAI|1|9|G|1175
*
3JAI|1|9|U|1186
3JAI|1|9|G|1187
3JAI|1|9|A|1188
3JAI|1|9|A|1189
3JAI|1|9|A|1190
3JAI|1|9|C|1191

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain XX
uS12
Chain n
eL41

Coloring options:


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