IL_3JAI_244

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

3JAI|1|9|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_244 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.3121

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3JAI|1|9|C|1395
3JAI|1|9|A|1396
3JAI|1|9|U|1397
3JAI|1|9|G|1398
3JAI|1|9|C|1399
*
3JAI|1|9|G|1447
3JAI|1|9|A|1448
3JAI|1|9|G|1449
3JAI|1|9|G|1450

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain DD

uS3

Chain QQ

uS9

Chain RR

eS17

Chain UU

uS10

Chain gg

RACK1