IL_3JAI_265

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_265 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.1719

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

3JAI|1|9|C|1742
3JAI|1|9|G|1743
3JAI|1|9|G|1744
3JAI|1|9|A|1745
3JAI|1|9|U|1746
*
3JAI|1|9|A|1788
3JAI|1|9|G|1789
3JAI|1|9|A|1790
3JAI|1|9|A|1791
3JAI|1|9|G|1792

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain GG

eS6

Chain II

eS8

Chain W

eL24