IL_3JAJ_005

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GACC*GACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAJ_005 not in the Motif Atlas

Homologous match to IL_1MFQ_004

Geometric discrepancy: 0.1468

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

3JAJ|1|4|G|138
3JAJ|1|4|A|139
3JAJ|1|4|C|140
3JAJ|1|4|C|141
*
3JAJ|1|4|G|156
3JAJ|1|4|A|157
3JAJ|1|4|C|158
3JAJ|1|4|C|159

Current chains

Chain 4

SRP 7S RNA

Nearby chains

Chain 9

SRP19