IL_3JAJ_008

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CCAGGU*GAGCAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAJ_008 not in the Motif Atlas

Homologous match to IL_1MFQ_007

Geometric discrepancy: 0.1454

The information below is about IL_1MFQ_007

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

3JAJ|1|4|C|190
3JAJ|1|4|C|191
3JAJ|1|4|A|192
3JAJ|1|4|G|193
3JAJ|1|4|G|194
3JAJ|1|4|U|195
*
3JAJ|1|4|G|204
3JAJ|1|4|A|205
3JAJ|1|4|G|206
3JAJ|1|4|C|207
3JAJ|1|4|A|208
3JAJ|1|4|G|209

Current chains

Chain 4

SRP 7S RNA

Nearby chains

Chain 9

SRP19

Chain z

SRP54