IL_3JAJ_030

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGUCCG*CGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAJ_030 not in the Motif Atlas

Geometric match to IL_1HYS_004

Geometric discrepancy: 0.3213

The information below is about IL_1HYS_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

3JAJ|1|5|G|482
3JAJ|1|5|G|483
3JAJ|1|5|U|484
3JAJ|1|5|C|485
3JAJ|1|5|C|486
3JAJ|1|5|G|487
*
3JAJ|1|5|C|669
3JAJ|1|5|G|670
3JAJ|1|5|G|671
3JAJ|1|5|C|672

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain r

Ribosomal protein eL28