IL_3JAJ_078
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 3JAJ|1|5|C|1935, 3JAJ|1|5|G|1940, 3JAJ|1|5|U|2044
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAJ_078 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.2336
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
3JAJ|1|5|G|1933
3JAJ|1|5|A|1934
3JAJ|1|5|C|1935
3JAJ|1|5|C|1936
3JAJ|1|5|C|1937
3JAJ|1|5|C|1938
3JAJ|1|5|A|1939
3JAJ|1|5|G|1940
3JAJ|1|5|A|1941
3JAJ|1|5|A|1942
3JAJ|1|5|A|1943
3JAJ|1|5|A|1944
*
3JAJ|1|5|U|2038
3JAJ|1|5|G|2039
3JAJ|1|5|A|2040
3JAJ|1|5|A|2041
3JAJ|1|5|A|2042
3JAJ|1|5|A|2043
3JAJ|1|5|U|2044
3JAJ|1|5|G|2045
3JAJ|1|5|G|2046
3JAJ|1|5|A|2047
3JAJ|1|5|U|2048
3JAJ|1|5|G|2049
3JAJ|1|5|G|2050
3JAJ|1|5|C|2051
3JAJ|1|5|G|2052
3JAJ|1|5|C|2053
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain B
- Ribosomal protein uL3
- Chain F
- Ribosomal protein uL30
- Chain I
- Ribosomal protein uL16
- Chain O
- Ribosomal protein uL13
- Chain f
- Ribosomal protein eL33
- Chain m
- Ribosomal protein eL40
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