IL_3JAJ_084
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- CGCUG*CAGGUG
- Length
- 11 nucleotides
- Bulged bases
- 3JAJ|1|5|G|2343
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAJ_084 not in the Motif Atlas
- Geometric match to IL_7VYX_008
- Geometric discrepancy: 0.3743
- The information below is about IL_7VYX_008
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.1
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
3JAJ|1|5|C|2290
3JAJ|1|5|G|2291
3JAJ|1|5|C|2292
3JAJ|1|5|U|2293
3JAJ|1|5|G|2294
*
3JAJ|1|5|C|2340
3JAJ|1|5|A|2341
3JAJ|1|5|G|2342
3JAJ|1|5|G|2343
3JAJ|1|5|U|2344
3JAJ|1|5|G|2345
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- Ribosomal protein uL4
- Chain a
- Ribosomal protein uL15
- Chain e
- Ribosomal protein eL32
- Chain r
- Ribosomal protein eL28
Coloring options: